Finite element and machine learning modeling are two predictive paradigms that have rarely been bridged. In this study, we develop a parametric model to generate arterial geometries and accumulate a database of 12,172 2D finite element simulations modeling the hyperelastic behavior and resulting stress distribution. The arterial wall composition mimics vessels in atherosclerosis–a complex cardiovascular disease and one of the leading causes of death globally. We formulate the training data to predict the maximum von Mises stress, which could indicate risk of plaque rupture. Trained deep learning models are able to accurately predict the max von Mises stress within 9.86% error on a held-out test set. The deep neural networks outperform alternative prediction models and performance scales with amount of training data. Lastly, we examine the importance of contributing features on stress value and location prediction to gain intuitions on the underlying process. Moreover, deep neural networks can capture the functional mapping described by the finite element method, which has far-reaching implications for real-time and multiscale prediction tasks in biomechanics.
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August 2019
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Bridging Finite Element and Machine Learning Modeling: Stress Prediction of Arterial Walls in Atherosclerosis
Ali Madani,
Ali Madani
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720
Search for other works by this author on:
Ahmed Bakhaty,
Ahmed Bakhaty
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Search for other works by this author on:
Jiwon Kim,
Jiwon Kim
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Electrical Engineering and Computer Science,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Electrical Engineering and Computer Science,
University of California,
Berkeley, CA 94720
Search for other works by this author on:
Yara Mubarak,
Yara Mubarak
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Search for other works by this author on:
Mohammad R. K. Mofrad
Mohammad R. K. Mofrad
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
208A Stanley Hall #1762,
Berkeley, CA 94720-1762;
Molecular Biophysics and Integrative Bioimaging Division,
Lawrence Berkeley National Lab,
Berkeley, CA 94720
e-mail: mofrad@berkeley.edu
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
208A Stanley Hall #1762,
Berkeley, CA 94720-1762;
Molecular Biophysics and Integrative Bioimaging Division,
Lawrence Berkeley National Lab,
Berkeley, CA 94720
e-mail: mofrad@berkeley.edu
1Corresponding author.
Search for other works by this author on:
Ali Madani
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720
Ahmed Bakhaty
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Jiwon Kim
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Electrical Engineering and Computer Science,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Electrical Engineering and Computer Science,
University of California,
Berkeley, CA 94720
Yara Mubarak
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
Berkeley, CA 94720;
Department of Civil Engineering,
University of California,
Berkeley, CA 94720
Mohammad R. K. Mofrad
Molecular Cell Biomechanics Laboratory,
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
208A Stanley Hall #1762,
Berkeley, CA 94720-1762;
Molecular Biophysics and Integrative Bioimaging Division,
Lawrence Berkeley National Lab,
Berkeley, CA 94720
e-mail: mofrad@berkeley.edu
Department of Bioengineering,
University of California,
Berkeley, CA 94720;
Department of Mechanical Engineering,
University of California,
208A Stanley Hall #1762,
Berkeley, CA 94720-1762;
Molecular Biophysics and Integrative Bioimaging Division,
Lawrence Berkeley National Lab,
Berkeley, CA 94720
e-mail: mofrad@berkeley.edu
1Corresponding author.
Manuscript received December 4, 2018; final manuscript received March 23, 2019; published online May 6, 2019. Assoc. Editor: Seungik Baek.
J Biomech Eng. Aug 2019, 141(8): 084502 (9 pages)
Published Online: May 6, 2019
Article history
Received:
December 4, 2018
Revised:
March 23, 2019
Citation
Madani, A., Bakhaty, A., Kim, J., Mubarak, Y., and Mofrad, M. R. K. (May 6, 2019). "Bridging Finite Element and Machine Learning Modeling: Stress Prediction of Arterial Walls in Atherosclerosis." ASME. J Biomech Eng. August 2019; 141(8): 084502. https://doi.org/10.1115/1.4043290
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